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No.
Title
Subset A
vs.
Subset B
Type
Up Fold(A/B)
Down Fold(A/B)
q value(Avg.)
1
Expression data from different research centers
universal RNA
vs.
liver
tissue
28.7
Symbol
Fold
NANOG
62.5
POU5F1
13.5135
SOX2
10.101
0.0
Symbol
Fold
0.0060
Symbol
q value
NANOG
0.006
POU5F1
0.006
SOX2
0.006
2
Expression data from different research centers
universal RNA
vs.
spleen
tissue
15.9
Symbol
Fold
NANOG
34.4828
POU5F1
10.3093
SOX2
2.87356
0.0
Symbol
Fold
0.0083
Symbol
q value
NANOG
0.006
POU5F1
0.006
SOX2
0.013
3
Expression data from different research centers
universal RNA
vs.
kidney
tissue
9.7
Symbol
Fold
NANOG
15.625
POU5F1
3.1348
SOX2
10.2041
0.0
Symbol
Fold
0.0020
Symbol
q value
NANOG
0
POU5F1
0.006
SOX2
0
4
Teratozoospermia (HG-U133 2.0 )
teratozoospermia
vs.
normal
disease state
8.2
Symbol
Fold
NANOG
20.236
POU5F1
2.037
SOX2
2.275
0.0
Symbol
Fold
0.0000
Symbol
q value
NANOG
0
POU5F1
0
SOX2
0
5
Immortalized endothelial cell line response to atorvastatin
primary
vs.
immortalized
cell line
6.7
Symbol
Fold
NANOG
9.52381
POU5F1
3.02115
SOX2
7.57576
0.0
Symbol
Fold
0.0063
Symbol
q value
NANOG
0
POU5F1
0.019
SOX2
0
6
Cutaneous malignant melanoma
normal
vs.
malignant melanoma
disease state
6.2
Symbol
Fold
NANOG
13.3333
POU5F1
3.81679
SOX2
1.5083
0.0
Symbol
Fold
0.0060
Symbol
q value
NANOG
0
POU5F1
0
SOX2
0.018
7
Hematopoietic stem cell engraftment in goat
Capra hircus
vs.
Homo sapiens
species
6.1
Symbol
Fold
NANOG
4.976
POU5F1
2.487
SOX2
10.809
0.0
Symbol
Fold
0.0127
Symbol
q value
NANOG
0.006
POU5F1
0.031
SOX2
0.001
8
Whole blood RNA isolation and leukocyte RNA purification: comparison of methods
PAXgene
vs.
buffy coat
protocol
4.2
Symbol
Fold
NANOG
2.155
POU5F1
4.791
SOX2
5.734
0.0
Symbol
Fold
0.0143
Symbol
q value
NANOG
0.038
POU5F1
0.003
SOX2
0.002
9
Whole blood RNA isolation and leukocyte RNA purification: comparison of methods
whole blood
vs.
leukocyte
tissue
4.2
Symbol
Fold
NANOG
2.155
POU5F1
4.791
SOX2
5.734
0.0
Symbol
Fold
0.0143
Symbol
q value
NANOG
0.038
POU5F1
0.003
SOX2
0.002
10
Presymptomatic and symptomatic malaria: peripheral blood mononuclear cells
uninfected
vs.
symptomatic, naturally acquired
disease state
3.3
Symbol
Fold
NANOG
4.4843
POU5F1
2.34742
SOX2
3.0303
0.0
Symbol
Fold
0.0000
Symbol
q value
NANOG
0
POU5F1
0
SOX2
0
11
Presymptomatic and symptomatic malaria: peripheral blood mononuclear cells
uninfected baseline
vs.
acute infection
infection
3.3
Symbol
Fold
NANOG
4.4843
POU5F1
2.34742
SOX2
3.0303
0.0
Symbol
Fold
0.0000
Symbol
q value
NANOG
0
POU5F1
0
SOX2
0
12
Plasma cell dyscrasias
monoclonal gammopathy of undetermined significance
vs.
plasma cell leukemia
disease state
2.7
Symbol
Fold
NANOG
3.41297
POU5F1
2.25734
SOX2
2.39808
0.0
Symbol
Fold
0.0273
Symbol
q value
NANOG
0.017
POU5F1
0.045
SOX2
0.02
13
Various normal pure cell cultures
epithelial
vs.
endothelial
cell type
2.6
Symbol
Fold
NANOG
1.642
POU5F1
1.881
SOX2
4.343
0.0
Symbol
Fold
0.0047
Symbol
q value
NANOG
0.009
POU5F1
0
SOX2
0.005
14
Various normal pure cell cultures
epithelial
vs.
smooth muscle
cell type
2.6
Symbol
Fold
NANOG
1.52439
POU5F1
1.68919
SOX2
4.4843
0.0
Symbol
Fold
0.0037
Symbol
q value
NANOG
0.006
POU5F1
0
SOX2
0.005
15
Glioma-derived stem cell factor effect on angiogenesis in the brain
oligodendrogliomas
vs.
non-tumor
disease state
2.3
Symbol
Fold
NANOG
1.468
POU5F1
2.194
SOX2
3.204
0.0
Symbol
Fold
0.0083
Symbol
q value
NANOG
0.025
POU5F1
0
SOX2
0
16
Glioma-derived stem cell factor effect on angiogenesis in the brain
tumor grade II
vs.
not applicable
tissue
2.3
Symbol
Fold
NANOG
1.486
POU5F1
2.241
SOX2
3.023
0.0
Symbol
Fold
0.0083
Symbol
q value
NANOG
0.025
POU5F1
0
SOX2
0
17
Carcinoma in situ lesions of the urinary bladder
normal urothelium
vs.
superficial transitional cell carcinoma w/ surrounding carcinoma in situ lesion
specimen
1.9
Symbol
Fold
NANOG
1.39665
POU5F1
1.46843
SOX2
2.8169
0.0
Symbol
Fold
0.0007
Symbol
q value
NANOG
0.002
POU5F1
0
SOX2
0
18
Carcinoma in situ lesions of the urinary bladder
carcinoma in situ lesion
vs.
superficial transitional cell carcinoma w/ surrounding carcinoma in situ lesion
specimen
1.9
Symbol
Fold
NANOG
1.903
POU5F1
1.175
SOX2
2.545
0.0
Symbol
Fold
0.0147
Symbol
q value
NANOG
0.001
POU5F1
0.043
SOX2
0
19
Carcinoma in situ lesions of the urinary bladder
carcinoma in situ lesion
vs.
muscle invasive carcinoma
specimen
1.8
Symbol
Fold
NANOG
2.134
POU5F1
1.193
SOX2
1.965
0.0
Symbol
Fold
0.0133
Symbol
q value
NANOG
0
POU5F1
0.04
SOX2
0
20
Carcinoma in situ lesions of the urinary bladder
normal urothelium
vs.
muscle invasive carcinoma
specimen
1.7
Symbol
Fold
NANOG
1.5674
POU5F1
1.49031
SOX2
2.17391
0.0
Symbol
Fold
0.0007
Symbol
q value
NANOG
0.001
POU5F1
0.001
SOX2
0
21
Gliomas of grades III and IV (HG-U133A)
grade III glioma
vs.
grade IV glioma
disease state
1.5
Symbol
Fold
NANOG
1.79533
POU5F1
1.32979
SOX2
1.23305
0.0
Symbol
Fold
0.0267
Symbol
q value
NANOG
0.035
POU5F1
0.024
SOX2
0.021
22
Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung
70
vs.
32
individual
1.3
Symbol
Fold
NANOG
1.13
POU5F1
1.675
SOX2
1.129
0.0
Symbol
Fold
0.0423
Symbol
q value
NANOG
0.043
POU5F1
0.046
SOX2
0.038
23
Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung
70
vs.
48
individual
1.3
Symbol
Fold
NANOG
1.081
POU5F1
1.708
SOX2
1.107
0.0
Symbol
Fold
0.0367
Symbol
q value
NANOG
0.036
POU5F1
0.041
SOX2
0.033
24
Non-diseased lung tissue
Caucasian
vs.
African American
other
1.2
Symbol
Fold
NANOG
1.627
POU5F1
1.053
SOX2
1.035
0.0
Symbol
Fold
0.0207
Symbol
q value
NANOG
0.012
POU5F1
0.034
SOX2
0.016
25
Interferons effect on endothelial cells
fibroblasts
vs.
endothelial cells
cell type
1.2
Symbol
Fold
NANOG
1.276
POU5F1
1.129
SOX2
1.2
0.0
Symbol
Fold
0.0070
Symbol
q value
NANOG
0.004
POU5F1
0.013
SOX2
0.004
26
Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung
89
vs.
53
individual
1.2
Symbol
Fold
NANOG
1.192
POU5F1
1.213
SOX2
1.055
0.0
Symbol
Fold
0.0357
Symbol
q value
NANOG
0.041
POU5F1
0.034
SOX2
0.032
27
Large airway epithelial cells from cigarette smokers with suspect lung cancer
suspect cancer
vs.
cancer
disease state
1.1
Symbol
Fold
NANOG
1.175
POU5F1
1.062
SOX2
1.175
0.0
Symbol
Fold
0.0043
Symbol
q value
NANOG
0.003
POU5F1
0.008
SOX2
0.002
28
Large airway epithelial cells from cigarette smokers with suspect lung cancer
suspect cancer
vs.
no cancer
disease state
1.1
Symbol
Fold
NANOG
1.162
POU5F1
1.051
SOX2
1.167
0.0
Symbol
Fold
0.0040
Symbol
q value
NANOG
0.002
POU5F1
0.009
SOX2
0.001
29
Waldenstrom's macroglobulinemia: B lymphocytes and plasma cells
normal
vs.
multiple myeloma
disease state
1.1
Symbol
Fold
NANOG
1.14943
POU5F1
1.07991
SOX2
1.09051
0.0
Symbol
Fold
0.0020
Symbol
q value
NANOG
0
POU5F1
0.003
SOX2
0.003
30
Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung
88
vs.
53
individual
1.1
Symbol
Fold
NANOG
1.122
POU5F1
1.108
SOX2
1.065
0.0
Symbol
Fold
0.0070
Symbol
q value
NANOG
0.006
POU5F1
0.01
SOX2
0.005
31
Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung
70
vs.
53
individual
1.1
Symbol
Fold
NANOG
1.142
POU5F1
1.047
SOX2
1.078
0.0
Symbol
Fold
0.0217
Symbol
q value
NANOG
0.022
POU5F1
0.022
SOX2
0.021
32
Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung
75
vs.
32
individual
1.1
Symbol
Fold
NANOG
1.136
POU5F1
1.052
SOX2
1.077
0.0
Symbol
Fold
0.0317
Symbol
q value
NANOG
0.039
POU5F1
0.028
SOX2
0.028
33
Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung
59
vs.
53
individual
1.1
Symbol
Fold
NANOG
1.124
POU5F1
1.055
SOX2
1.086
0.0
Symbol
Fold
0.0453
Symbol
q value
NANOG
0.044
POU5F1
0.048
SOX2
0.044
34
Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung
88
vs.
48
individual
1.1
Symbol
Fold
NANOG
1.061
POU5F1
1.119
SOX2
1.064
0.0
Symbol
Fold
0.0187
Symbol
q value
NANOG
0.029
POU5F1
0.018
SOX2
0.009
35
Tamoxifen effect on breast cancer cell line expressing estrogen receptor alpha and beta
adenovirus carrying estrogen receptor beta
vs.
control adenovirus
infection
1.1
Symbol
Fold
NANOG
1.047
POU5F1
1.112
SOX2
1.083
0.0
Symbol
Fold
0.0300
Symbol
q value
NANOG
0.036
POU5F1
0.027
SOX2
0.027
36
Waldenstrom's macroglobulinemia: B lymphocytes and plasma cells
normal
vs.
chronic lymphocytic leukemia
disease state
1.1
Symbol
Fold
NANOG
1.06045
POU5F1
1.09529
SOX2
1.08225
0.0
Symbol
Fold
0.0183
Symbol
q value
NANOG
0.027
POU5F1
0.005
SOX2
0.023
37
Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung
75
vs.
53
individual
1.1
Symbol
Fold
NANOG
1.148
POU5F1
1.047
SOX2
1.04
0.0
Symbol
Fold
0.0123
Symbol
q value
NANOG
0.013
POU5F1
0.013
SOX2
0.011
38
Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung
75
vs.
48
individual
1.1
Symbol
Fold
NANOG
1.086
POU5F1
1.058
SOX2
1.069
0.0
Symbol
Fold
0.0283
Symbol
q value
NANOG
0.035
POU5F1
0.037
SOX2
0.013
39
Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung
70
vs.
37
individual
1.1
Symbol
Fold
NANOG
1.064
POU5F1
1.063
SOX2
1.074
0.0
Symbol
Fold
0.0353
Symbol
q value
NANOG
0.044
POU5F1
0.032
SOX2
0.03
40
Waldenstrom's macroglobulinemia: B lymphocytes and plasma cells
Waldenstrom's macroglobulinemia
vs.
multiple myeloma
disease state
1.1
Symbol
Fold
NANOG
1.11235
POU5F1
1.04603
SOX2
1.04167
0.0
Symbol
Fold
0.0197
Symbol
q value
NANOG
0.001
POU5F1
0.013
SOX2
0.045
41
Blood response to various beverages: time course
IF
vs.
MB
individual
1.1
Symbol
Fold
NANOG
1.01833
POU5F1
1.05932
SOX2
1.10375
0.0
Symbol
Fold
0.0150
Symbol
q value
NANOG
0.045
POU5F1
0
SOX2
0
42
Gefitinib effect on various non-small cell lung cancer cell lines (HG-U133A)
test set
vs.
training set
protocol
1.0
Symbol
Fold
NANOG
1.063
POU5F1
1.039
SOX2
1.047
0.0
Symbol
Fold
0.0007
Symbol
q value
NANOG
0.001
POU5F1
0
SOX2
0.001
43
Heat shock transcription factor HSF1 depleted cells response to heat shock: time course
siHSF1_2
vs.
siHSF1_1
agent
1.0
Symbol
Fold
NANOG
1.07
POU5F1
1.025
SOX2
1.022
0.0
Symbol
Fold
0.0100
Symbol
q value
NANOG
0
POU5F1
0.004
SOX2
0.026
44
Blood response to various beverages: time course
CJ
vs.
MB
individual
1.0
Symbol
Fold
NANOG
1.02249
POU5F1
1.03734
SOX2
1.05708
0.0
Symbol
Fold
0.0163
Symbol
q value
NANOG
0.048
POU5F1
0.001
SOX2
0
45
Blood response to various beverages: time course
JR
vs.
MB
individual
1.0
Symbol
Fold
NANOG
1.02354
POU5F1
1.02145
SOX2
1.07181
0.0
Symbol
Fold
0.0100
Symbol
q value
NANOG
0.021
POU5F1
0.009
SOX2
0
46
Heat shock transcription factor HSF1 depleted cells response to heat shock: time course
siLuc
vs.
siHSF1_1
agent
1.0
Symbol
Fold
NANOG
1.05597
POU5F1
1.02041
SOX2
1.02564
0.0
Symbol
Fold
0.0133
Symbol
q value
NANOG
0
POU5F1
0.028
SOX2
0.012
47
Blood response to various beverages: time course
CM
vs.
MB
individual
1.0
Symbol
Fold
NANOG
1.02354
POU5F1
1.0352
SOX2
1.04275
0.0
Symbol
Fold
0.0160
Symbol
q value
NANOG
0.046
POU5F1
0.001
SOX2
0.001
48
2-(3,4,5-trimethoxyphenylamino)-pyrrolo[2,3-d]pyrimidine effect on epidermal keratinocytes: time course
12 h
vs.
36 h
time
1.0
Symbol
Fold
NANOG
1.05042
POU5F1
1.01523
SOX2
1.02775
0.0
Symbol
Fold
0.0113
Symbol
q value
NANOG
0.011
POU5F1
0.012
SOX2
0.011
49
Vanadium pentoxide effect on lung fibroblasts: time course
V205
vs.
H202
agent
1.0
Symbol
Fold
NANOG
1.015
POU5F1
1.039
SOX2
1.035
0.0
Symbol
Fold
0.0187
Symbol
q value
NANOG
0.042
POU5F1
0.005
SOX2
0.009
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