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Link to this page No. Title Subset A vs. Subset B Type Up Fold(A/B) Down Fold(A/B) q value(Avg.) 1 Expression data from different research centers  universal RNA vs. liver tissue 25.3 Symbol Fold LIN28 14.9254 NANOG 62.5 POU5F1 13.5135 SOX2 10.101 0.0 Symbol Fold 0.0060 Symbol q value LIN28 0.006 NANOG 0.006 POU5F1 0.006 SOX2 0.006 2 Expression data from different research centers  universal RNA vs. spleen tissue 15.1 Symbol Fold LIN28 12.6582 NANOG 34.4828 POU5F1 10.3093 SOX2 2.87356 0.0 Symbol Fold 0.0078 Symbol q value LIN28 0.006 NANOG 0.006 POU5F1 0.006 SOX2 0.013 3 Expression data from different research centers  universal RNA vs. kidney tissue 11.7 Symbol Fold LIN28 17.8571 NANOG 15.625 POU5F1 3.1348 SOX2 10.2041 0.0 Symbol Fold 0.0015 Symbol q value LIN28 0 NANOG 0 POU5F1 0.006 SOX2 0 4 Immortalized endothelial cell line response to atorvastatin  primary vs. immortalized cell line 5.9 Symbol Fold LIN28 3.40136 NANOG 9.52381 POU5F1 3.02115 SOX2 7.57576 0.0 Symbol Fold 0.0053 Symbol q value LIN28 0.002 NANOG 0 POU5F1 0.019 SOX2 0 5 Hematopoietic stem cell engraftment in goat  Capra hircus vs. Homo sapiens species 5.4 Symbol Fold LIN28 3.332 NANOG 4.976 POU5F1 2.487 SOX2 10.809 0.0 Symbol Fold 0.0133 Symbol q value LIN28 0.015 NANOG 0.006 POU5F1 0.031 SOX2 0.001 6 Cutaneous malignant melanoma  normal vs. malignant melanoma disease state 5.2 Symbol Fold LIN28 2.31481 NANOG 13.3333 POU5F1 3.81679 SOX2 1.5083 0.0 Symbol Fold 0.0127 Symbol q value LIN28 0.033 NANOG 0 POU5F1 0 SOX2 0.018 7 Glioma-derived stem cell factor effect on angiogenesis in the brain  oligodendrogliomas vs. non-tumor disease state 2.1 Symbol Fold LIN28 1.453 NANOG 1.468 POU5F1 2.194 SOX2 3.204 0.0 Symbol Fold 0.0078 Symbol q value LIN28 0.006 NANOG 0.025 POU5F1 0 SOX2 0 8 Glioma-derived stem cell factor effect on angiogenesis in the brain  tumor grade II vs. not applicable tissue 2.1 Symbol Fold LIN28 1.505 NANOG 1.486 POU5F1 2.241 SOX2 3.023 0.0 Symbol Fold 0.0068 Symbol q value LIN28 0.002 NANOG 0.025 POU5F1 0 SOX2 0 9 Carcinoma in situ lesions of the urinary bladder  normal urothelium vs. superficial transitional cell carcinoma w/ surrounding carcinoma in situ lesion specimen 1.9 Symbol Fold LIN28 1.9305 NANOG 1.39665 POU5F1 1.46843 SOX2 2.8169 0.0 Symbol Fold 0.0005 Symbol q value LIN28 0 NANOG 0.002 POU5F1 0 SOX2 0 10 Carcinoma in situ lesions of the urinary bladder  carcinoma in situ lesion vs. superficial transitional cell carcinoma w/ surrounding carcinoma in situ lesion specimen 1.9 Symbol Fold LIN28 1.807 NANOG 1.903 POU5F1 1.175 SOX2 2.545 0.0 Symbol Fold 0.0110 Symbol q value LIN28 0 NANOG 0.001 POU5F1 0.043 SOX2 0 11 Carcinoma in situ lesions of the urinary bladder  normal urothelium vs. muscle invasive carcinoma specimen 1.7 Symbol Fold LIN28 1.65837 NANOG 1.5674 POU5F1 1.49031 SOX2 2.17391 0.0 Symbol Fold 0.0010 Symbol q value LIN28 0.002 NANOG 0.001 POU5F1 0.001 SOX2 0 12 Carcinoma in situ lesions of the urinary bladder  carcinoma in situ lesion vs. muscle invasive carcinoma specimen 1.7 Symbol Fold LIN28 1.552 NANOG 2.134 POU5F1 1.193 SOX2 1.965 0.0 Symbol Fold 0.0105 Symbol q value LIN28 0.002 NANOG 0 POU5F1 0.04 SOX2 0 13 Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung  70 vs. 32 individual 1.6 Symbol Fold LIN28 2.289 NANOG 1.13 POU5F1 1.675 SOX2 1.129 0.0 Symbol Fold 0.0413 Symbol q value LIN28 0.038 NANOG 0.043 POU5F1 0.046 SOX2 0.038 14 Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung  70 vs. 48 individual 1.5 Symbol Fold LIN28 2.203 NANOG 1.081 POU5F1 1.708 SOX2 1.107 0.0 Symbol Fold 0.0357 Symbol q value LIN28 0.033 NANOG 0.036 POU5F1 0.041 SOX2 0.033 15 Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung  70 vs. 53 individual 1.4 Symbol Fold LIN28 2.455 NANOG 1.142 POU5F1 1.047 SOX2 1.078 0.0 Symbol Fold 0.0215 Symbol q value LIN28 0.021 NANOG 0.022 POU5F1 0.022 SOX2 0.021 16 Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung  70 vs. 37 individual 1.3 Symbol Fold LIN28 2.129 NANOG 1.064 POU5F1 1.063 SOX2 1.074 0.0 Symbol Fold 0.0335 Symbol q value LIN28 0.028 NANOG 0.044 POU5F1 0.032 SOX2 0.03 17 Interferons effect on endothelial cells  fibroblasts vs. endothelial cells cell type 1.3 Symbol Fold LIN28 1.517 NANOG 1.276 POU5F1 1.129 SOX2 1.2 0.0 Symbol Fold 0.0053 Symbol q value LIN28 0 NANOG 0.004 POU5F1 0.013 SOX2 0.004 18 Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung  89 vs. 53 individual 1.2 Symbol Fold LIN28 1.361 NANOG 1.192 POU5F1 1.213 SOX2 1.055 0.0 Symbol Fold 0.0350 Symbol q value LIN28 0.033 NANOG 0.041 POU5F1 0.034 SOX2 0.032 19 Non-diseased lung tissue  Caucasian vs. African American other 1.2 Symbol Fold LIN28 1.039 NANOG 1.627 POU5F1 1.053 SOX2 1.035 0.0 Symbol Fold 0.0248 Symbol q value LIN28 0.037 NANOG 0.012 POU5F1 0.034 SOX2 0.016 20 Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung  75 vs. 53 individual 1.2 Symbol Fold LIN28 1.432 NANOG 1.148 POU5F1 1.047 SOX2 1.04 0.0 Symbol Fold 0.0125 Symbol q value LIN28 0.013 NANOG 0.013 POU5F1 0.013 SOX2 0.011 21 Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung  59 vs. 53 individual 1.2 Symbol Fold LIN28 1.382 NANOG 1.124 POU5F1 1.055 SOX2 1.086 0.0 Symbol Fold 0.0445 Symbol q value LIN28 0.042 NANOG 0.044 POU5F1 0.048 SOX2 0.044 22 Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung  75 vs. 32 individual 1.2 Symbol Fold LIN28 1.336 NANOG 1.136 POU5F1 1.052 SOX2 1.077 0.0 Symbol Fold 0.0310 Symbol q value LIN28 0.029 NANOG 0.039 POU5F1 0.028 SOX2 0.028 23 Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung  88 vs. 53 individual 1.1 Symbol Fold LIN28 1.293 NANOG 1.122 POU5F1 1.108 SOX2 1.065 0.0 Symbol Fold 0.0068 Symbol q value LIN28 0.006 NANOG 0.006 POU5F1 0.01 SOX2 0.005 24 Large airway epithelial cells from cigarette smokers with suspect lung cancer  suspect cancer vs. cancer disease state 1.1 Symbol Fold LIN28 1.166 NANOG 1.175 POU5F1 1.062 SOX2 1.175 0.0 Symbol Fold 0.0048 Symbol q value LIN28 0.006 NANOG 0.003 POU5F1 0.008 SOX2 0.002 25 Large airway epithelial cells from cigarette smokers with suspect lung cancer  suspect cancer vs. no cancer disease state 1.1 Symbol Fold LIN28 1.16 NANOG 1.162 POU5F1 1.051 SOX2 1.167 0.0 Symbol Fold 0.0040 Symbol q value LIN28 0.004 NANOG 0.002 POU5F1 0.009 SOX2 0.001 26 Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung  75 vs. 48 individual 1.1 Symbol Fold LIN28 1.286 NANOG 1.086 POU5F1 1.058 SOX2 1.069 0.0 Symbol Fold 0.0278 Symbol q value LIN28 0.026 NANOG 0.035 POU5F1 0.037 SOX2 0.013 27 Tamoxifen effect on breast cancer cell line expressing estrogen receptor alpha and beta  adenovirus carrying estrogen receptor beta vs. control adenovirus infection 1.1 Symbol Fold LIN28 1.177 NANOG 1.047 POU5F1 1.112 SOX2 1.083 0.0 Symbol Fold 0.0290 Symbol q value LIN28 0.026 NANOG 0.036 POU5F1 0.027 SOX2 0.027 28 Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung  88 vs. 48 individual 1.1 Symbol Fold LIN28 1.161 NANOG 1.061 POU5F1 1.119 SOX2 1.064 0.0 Symbol Fold 0.0173 Symbol q value LIN28 0.013 NANOG 0.029 POU5F1 0.018 SOX2 0.009 29 Waldenstrom's macroglobulinemia: B lymphocytes and plasma cells  normal vs. multiple myeloma disease state 1.1 Symbol Fold LIN28 1.06383 NANOG 1.14943 POU5F1 1.07991 SOX2 1.09051 0.0 Symbol Fold 0.0025 Symbol q value LIN28 0.004 NANOG 0 POU5F1 0.003 SOX2 0.003 30 Blood response to various beverages: time course  IF vs. MB individual 1.1 Symbol Fold LIN28 1.0352 NANOG 1.01833 POU5F1 1.05932 SOX2 1.10375 0.0 Symbol Fold 0.0115 Symbol q value LIN28 0.001 NANOG 0.045 POU5F1 0 SOX2 0 31 Gefitinib effect on various non-small cell lung cancer cell lines (HG-U133A)  test set vs. training set protocol 1.0 Symbol Fold LIN28 1.047 NANOG 1.063 POU5F1 1.039 SOX2 1.047 0.0 Symbol Fold 0.0005 Symbol q value LIN28 0 NANOG 0.001 POU5F1 0 SOX2 0.001 32 Blood response to various beverages: time course  JR vs. MB individual 1.0 Symbol Fold LIN28 1.07181 NANOG 1.02354 POU5F1 1.02145 SOX2 1.07181 0.0 Symbol Fold 0.0075 Symbol q value LIN28 0 NANOG 0.021 POU5F1 0.009 SOX2 0 33 2-(3,4,5-trimethoxyphenylamino)-pyrrolo[2,3-d]pyrimidine effect on epidermal keratinocytes: time course  12 h vs. 36 h time 1.0 Symbol Fold LIN28 1.07759 NANOG 1.05042 POU5F1 1.01523 SOX2 1.02775 0.0 Symbol Fold 0.0118 Symbol q value LIN28 0.013 NANOG 0.011 POU5F1 0.012 SOX2 0.011 34 Blood response to various beverages: time course  CM vs. MB individual 1.0 Symbol Fold LIN28 1.04167 NANOG 1.02354 POU5F1 1.0352 SOX2 1.04275 0.0 Symbol Fold 0.0130 Symbol q value LIN28 0.004 NANOG 0.046 POU5F1 0.001 SOX2 0.001 35 Vanadium pentoxide effect on lung fibroblasts: time course  V205 vs. H202 agent 1.0 Symbol Fold LIN28 1.03 NANOG 1.015 POU5F1 1.039 SOX2 1.035 0.0 Symbol Fold 0.0180 Symbol q value LIN28 0.016 NANOG 0.042 POU5F1 0.005 SOX2 0.009

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