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fitSNPs
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Items 1 - 20 of 65 significant comparisons.
of 4
HomoloGene group
78027
for NANOG,nanog homeobox was differentially expressed in 65 of 5706 comparisons.
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Enter Entrez Gene ID/Symbol/Gene Identifier
q value:
?>
0.2
0.1
0.05
0.02
0.01
0.005
Include studies in other species:
Bar Length
Fold change (max at fold ≥ 256)
Bar Width
Directly proportional to Rank (Rank percentile among all differentially expressed genes in each study).
Mouseover
Study title, fold change, Rank, q value.
Bar color
q value
q value range
Color code
<0.001
Red
0.001-0.0025
Tomato
0.0025-0.005
Light Salmon
0.005-0.01
Orange
0.01-0.025
Yellow
0.025-0.05
GreenYellow
0.05-0.1
LightGreen
0.1-0.15
SpringGreen
0.15-0.2
DarkGreen
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To open microarray study with reference.
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To open genes for the corresponding comparison - GeneCentric page.
Fold
Scale for measuring the foldchange value.
No.
Species Name
Title
Differential Expression (A
vs.
B)
Type
Fold (A/B)
Rank (%ile)
q value
Fold
2
4
8
16
32
64
128
256
1
Mus musculus
Transcription factor Zfx deficiency effect on embryonic and hematopoietic stem cells
cell type
1000.0
99.8
0.006
hematopoietic stem cell
vs.
embryonic stem cell
2
Mus musculus
Preimplantation embryo development (MOE430A)
development stage
243.2
99.7
0.009
oocyte
vs.
blastocyst
3
Mus musculus
Preimplantation embryo development (MOE430A)
development stage
138.1
99.5
0.009
oocyte
vs.
8-cell
4
Mus musculus
Embryonic stem cell cholesterol metabolism mutants
cell type
90.9
99.1
0.000
liver
vs.
embryonic stem cell
5
Mus musculus
Preimplantation embryo development (MOE430A)
development stage
69.7
99.7
0.009
2-cell
vs.
blastocyst
6
Homo sapiens
Expression data from different research centers
tissue
62.5
99.8
0.006
liver
vs.
universal RNA
7
Mus musculus
Preimplantation embryo development (MOE430A)
development stage
58.9
97.9
0.007
1-cell
vs.
blastocyst
8
Mus musculus
Preimplantation embryo development (MG-U74A)
development stage
54.3
98.1
0.010
oocyte
vs.
8-cell
9
Homo sapiens
Expression data from different research centers
tissue
34.5
99.5
0.006
spleen
vs.
universal RNA
10
Homo sapiens
Teratozoospermia (HG-U133 2.0 )
disease state
20.2
99.5
0.000
normal
vs.
teratozoospermia
11
Homo sapiens
Expression data from different research centers
tissue
15.6
98
0.000
kidney
vs.
universal RNA
12
Homo sapiens
Essential thrombocythemia
cell type
14.1
76.5
0.008
white blood cell
vs.
platelet
13
Homo sapiens
Cutaneous malignant melanoma
disease state
13.3
98.6
0.000
malignant melanoma
vs.
normal
14
Homo sapiens
Leukemic white blood cells and various RNA preparation protocols
individual
11.2
87.8
0.007
patient 27
vs.
patient 16
15
Homo sapiens
Asbestos effect on epithelial and mesothelial lung cell lines: time course
cell line
11.1
94.2
0.001
Met5A
vs.
Beas2B
16
Mus musculus
Embryonic stem cell line response to the conditional expression of neurogenin 3
time
11.1
95.3
0.000
10 days
vs.
3 days
17
Homo sapiens
Leukemic white blood cells and various RNA preparation protocols
individual
9.7
90.1
0.006
patient 27
vs.
patient 25
18
Homo sapiens
Immortalized endothelial cell line response to atorvastatin
cell line
9.5
93.1
0.000
immortalized
vs.
primary
19
Mus musculus
Dystrophin-deficient mdx hindlimb muscle development time course
age
8.1
98
0.006
23 day
vs.
14 day
20
Mus musculus
Dystrophin-deficient mdx hindlimb muscle development time course
age
7.0
100
0.007
23 day
vs.
112 day
Fold
2
4
8
16
32
64
128
256
Display Results :
Graphical
Textual
Sort By
q value
Fold
Title
Rank
Species
Show
10
20
50
100
200
500
Filter with: Comparison
All
Test ALL
age
agent
cell line
cell type
development stage
disease state
dose
gender
genotype/variation
growth protocol
individual
infection
isolate
metabolism
other
protocol
shock
species
specimen
strain
stress
temperature
time
tissue
q value
<=0.2
<=0.1
<=0.05
<=0.02
<=0.01
<=0.005
Fold
All
>2
>3
>5
>10
Rank
All
>95%ile
>90%ile
>75%ile
>50%ile
>25%ile
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. Last updated on June 23 2009
